rs584386112 SNP Detail

Summary

• ID
  rs584386112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133865889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGA TGATGATGAT GATGATGATG
  R
  TGATGGTGAT GGTGATGGTG ATGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	SJL/J	SWR/J	WSB/EiJ
ss924872983	MGP_WTSI_X_134965140	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	SJL/J	SWR/J	WSB/EiJ
rs584386112					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924872983	MGP_WTSI_X_134965140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133865889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	1123 bp distal
Nxf2	nuclear RNA export factor 2	386 bp upstream
Rr693643	regulatory region 693643	1255 bp distal
Rr693644	regulatory region 693644	1154 bp distal
Tssr164159	transcription start site region 164159	414 bp upstream
Tssr164160	transcription start site region 164160	373 bp upstream