rs584391481 SNP Detail

Summary

• ID
  rs584391481
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32697476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA GAAAATAAAG TAAAAAAAAA
  A
  GGGGGGGGGG GAATAACATT TCGTA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss923117458	MGP_WTSI_16_32877106	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs584391481					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923117458	MGP_WTSI_16_32877106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32697476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	240 bp proximal
Fyttd1	forty-two-three domain containing 1	394 bp upstream
Rr404782	regulatory region 404782	709 bp upstream
Rr514841	regulatory region 514841	1585 bp distal
Rr514842	regulatory region 514842	967 bp distal
Rr514843	regulatory region 514843	within coordinates
Rr514844	regulatory region 514844	650 bp proximal
Rr514845	regulatory region 514845	1035 bp proximal
Rr514846	regulatory region 514846	1982 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr138060	transcription start site region 138060	669 bp upstream
Tssr138061	transcription start site region 138061	727 bp upstream
Tssr138062	transcription start site region 138062	779 bp upstream
Tssr138063	transcription start site region 138063	979 bp upstream
Tssr138064	transcription start site region 138064	995 bp upstream
Tssr140832	transcription start site region 140832	503 bp downstream
Tssr140833	transcription start site region 140833	531 bp downstream
Tssr140834	transcription start site region 140834	581 bp downstream
Tssr140835	transcription start site region 140835	617 bp downstream