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rs584410724 SNP Detail
Summary
  • ID
    rs584410724
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr5:137179507 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAGTG GTGGTGACAT CACCAGTGGT
G
GTGACTTCAG CAGTGGTAGT GACAT                                      

G = G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
JF1/MsJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss917727738 MGP_WTSI_5_137150659 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
JF1/MsJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584410724 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss917727738 MGP_WTSI_5_137150659 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137179507 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 1391 bp upstream
Tssr1678 transcription start site region 1678 166 bp upstream
Tssr1679 transcription start site region 1679 768 bp downstream
Tssr1680 transcription start site region 1680 788 bp upstream
Tssr1681 transcription start site region 1681 811 bp downstream
Tssr1682 transcription start site region 1682 828 bp downstream
Tssr1683 transcription start site region 1683 917 bp downstream
Tssr1684 transcription start site region 1684 933 bp downstream
Tssr1685 transcription start site region 1685 947 bp upstream
Tssr1686 transcription start site region 1686 974 bp downstream
Tssr1687 transcription start site region 1687 1025 bp downstream
Tssr1688 transcription start site region 1688 1049 bp downstream
Tssr1689 transcription start site region 1689 1068 bp upstream
Tssr1690 transcription start site region 1690 1235 bp upstream
Tssr1691 transcription start site region 1691 1239 bp downstream
Tssr1692 transcription start site region 1692 1403 bp downstream
Tssr1693 transcription start site region 1693 1545 bp upstream
Tssr1694 transcription start site region 1694 1583 bp downstream
Tssr1695 transcription start site region 1695 1702 bp upstream
Tssr1696 transcription start site region 1696 1759 bp upstream
Tssr49309 transcription start site region 49309 858 bp downstream
Tssr49310 transcription start site region 49310 516 bp downstream
Tssr49311 transcription start site region 49311 492 bp downstream
Tssr49312 transcription start site region 49312 101 bp downstream
Tssr49313 transcription start site region 49313 121 bp upstream
Tssr49314 transcription start site region 49314 392 bp upstream
Tssr49315 transcription start site region 49315 408 bp upstream
Tssr49316 transcription start site region 49316 1324 bp upstream
Tssr49317 transcription start site region 49317 1594 bp upstream
Tssr49318 transcription start site region 49318 1776 bp upstream
Tssr53919 transcription start site region 53919 1011 bp upstream
Tssr53920 transcription start site region 53920 976 bp upstream
Tssr53921 transcription start site region 53921 818 bp upstream
Tssr53922 transcription start site region 53922 802 bp upstream
Tssr53923 transcription start site region 53923 760 bp upstream
Tssr53924 transcription start site region 53924 741 bp upstream
Tssr53925 transcription start site region 53925 709 bp upstream
Tssr53926 transcription start site region 53926 675 bp upstream
Tssr53927 transcription start site region 53927 526 bp upstream
Tssr53928 transcription start site region 53928 513 bp upstream
Tssr53929 transcription start site region 53929 473 bp upstream
Tssr53930 transcription start site region 53930 402 bp upstream
Tssr53931 transcription start site region 53931 384 bp upstream
Tssr53932 transcription start site region 53932 366 bp upstream
Tssr53933 transcription start site region 53933 327 bp upstream
Tssr53934 transcription start site region 53934 294 bp upstream
Tssr53935 transcription start site region 53935 241 bp upstream
Tssr53936 transcription start site region 53936 218 bp upstream
Tssr53937 transcription start site region 53937 133 bp upstream
Tssr53938 transcription start site region 53938 92 bp upstream
Tssr53939 transcription start site region 53939 43 bp upstream
Tssr53940 transcription start site region 53940 123 bp downstream
Tssr53941 transcription start site region 53941 163 bp downstream
Tssr53942 transcription start site region 53942 222 bp downstream
Tssr53943 transcription start site region 53943 387 bp downstream
Tssr53944 transcription start site region 53944 436 bp downstream
Tssr53945 transcription start site region 53945 446 bp downstream
Tssr53946 transcription start site region 53946 467 bp downstream
Tssr53947 transcription start site region 53947 575 bp downstream
Tssr53948 transcription start site region 53948 1471 bp downstream
Tssr53949 transcription start site region 53949 1512 bp downstream
Tssr53950 transcription start site region 53950 1634 bp downstream
Tssr53951 transcription start site region 53951 1746 bp downstream
Tssr53952 transcription start site region 53952 1760 bp downstream
Tssr53953 transcription start site region 53953 1850 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory