rs584417282 SNP Detail

Summary

• ID
  rs584417282
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40159828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG GCTCAGTGGG TAAGAGCACC
  C
  GACTGCTCTC CCGAAGGTCA GGAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SWR/J
ss923560666	MGP_WTSI_17_39848937	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SWR/J
rs584417282					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923560666	MGP_WTSI_17_39848937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40159828 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	106 bp distal
Gm26917	predicted gene, 26917	149 bp downstream
Rn18s	18S ribosomal RNA	736 bp distal
Rn18s-rs5	18s RNA, related sequence 5	735 bp downstream
Tssr144609	transcription start site region 144609	1878 bp downstream
Tssr144610	transcription start site region 144610	1722 bp downstream
Tssr144611	transcription start site region 144611	1599 bp downstream
Tssr144612	transcription start site region 144612	1489 bp downstream
Tssr144613	transcription start site region 144613	1345 bp downstream
Tssr144614	transcription start site region 144614	1323 bp downstream
Tssr144615	transcription start site region 144615	1242 bp downstream
Tssr144616	transcription start site region 144616	1152 bp downstream
Tssr144617	transcription start site region 144617	1125 bp downstream
Tssr144618	transcription start site region 144618	1108 bp downstream
Tssr144619	transcription start site region 144619	1065 bp downstream
Tssr144620	transcription start site region 144620	1042 bp downstream
Tssr144621	transcription start site region 144621	928 bp downstream
Tssr144622	transcription start site region 144622	912 bp downstream
Tssr144623	transcription start site region 144623	882 bp downstream
Tssr144624	transcription start site region 144624	747 bp downstream
Tssr144625	transcription start site region 144625	730 bp downstream
Tssr144626	transcription start site region 144626	701 bp downstream
Tssr144627	transcription start site region 144627	669 bp downstream
Tssr144628	transcription start site region 144628	510 bp downstream
Tssr144629	transcription start site region 144629	436 bp downstream
Tssr144630	transcription start site region 144630	427 bp downstream
Tssr144631	transcription start site region 144631	330 bp downstream
Tssr144632	transcription start site region 144632	220 bp downstream
Tssr144633	transcription start site region 144633	173 bp downstream
Tssr148065	transcription start site region 148065	1153 bp upstream
Tssr148066	transcription start site region 148066	1076 bp upstream
Tssr148067	transcription start site region 148067	976 bp upstream
Tssr148068	transcription start site region 148068	878 bp upstream
Tssr148069	transcription start site region 148069	695 bp upstream
Tssr148070	transcription start site region 148070	631 bp upstream
Tssr148071	transcription start site region 148071	605 bp upstream
Tssr148072	transcription start site region 148072	277 bp upstream