rs584419806 SNP Detail

Summary

• ID
  rs584419806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60228128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT CCCAGAAGTC CAAGTCTTCC
  Y
  GAAAATCCAA GTCTTCCCGA AAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss924556977	MGP_WTSI_X_61184522	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs584419806					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924556977	MGP_WTSI_X_61184522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60228128 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	within coordinates
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	500 bp downstream
Tssr161077	transcription start site region 161077	1263 bp downstream
Tssr161078	transcription start site region 161078	1239 bp downstream
Tssr161079	transcription start site region 161079	1207 bp downstream
Tssr161080	transcription start site region 161080	1188 bp downstream
Tssr161081	transcription start site region 161081	1056 bp downstream
Tssr161082	transcription start site region 161082	1036 bp downstream
Tssr161083	transcription start site region 161083	959 bp downstream
Tssr161084	transcription start site region 161084	722 bp downstream
Tssr161085	transcription start site region 161085	705 bp downstream
Tssr161086	transcription start site region 161086	646 bp downstream
Tssr161087	transcription start site region 161087	613 bp downstream
Tssr161088	transcription start site region 161088	589 bp downstream
Tssr161089	transcription start site region 161089	572 bp downstream
Tssr161090	transcription start site region 161090	886 bp upstream
Tssr161091	transcription start site region 161091	995 bp upstream
Tssr161092	transcription start site region 161092	1109 bp upstream
Tssr161093	transcription start site region 161093	1154 bp upstream
Tssr161094	transcription start site region 161094	1178 bp upstream
Tssr161095	transcription start site region 161095	1219 bp upstream
Tssr161096	transcription start site region 161096	1258 bp upstream
Tssr161097	transcription start site region 161097	1326 bp upstream
Tssr161098	transcription start site region 161098	1356 bp upstream
Tssr161099	transcription start site region 161099	1472 bp upstream
Tssr161100	transcription start site region 161100	1515 bp upstream
Tssr161101	transcription start site region 161101	1536 bp upstream
Tssr161102	transcription start site region 161102	1608 bp upstream