rs584435853 SNP Detail

Summary

• ID
  rs584435853
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154406429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG CGCCCGCAGC GGCGGCGGCG
  A
  CGGCGGCGGC GGCGGAGGCA AGACC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss924953495	MGP_WTSI_X_155623433	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs584435853					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924953495	MGP_WTSI_X_155623433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154406429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23014	CpG island 23014	within coordinates
Cpgi23015	CpG island 23015	1161 bp proximal
Gm15156	predicted gene 15156	72 bp downstream
Ptchd1	patched domain containing 1	within coordinates
Ptchd1as	Ptchd1 antisense RNA	1103 bp upstream
Rr694584	regulatory region 694584	634 bp distal
Rr694585	regulatory region 694585	within coordinates
Rr694586	regulatory region 694586	852 bp proximal
Rr694587	regulatory region 694587	1353 bp proximal
Tssr162424	transcription start site region 162424	768 bp downstream
Tssr162425	transcription start site region 162425	735 bp downstream
Tssr162426	transcription start site region 162426	622 bp downstream
Tssr164445	transcription start site region 164445	48 bp downstream
Tssr164446	transcription start site region 164446	92 bp downstream
Tssr164447	transcription start site region 164447	372 bp downstream
Tssr164448	transcription start site region 164448	647 bp downstream
Tssr164449	transcription start site region 164449	702 bp downstream