rs584479182 SNP Detail

Summary

• ID
  rs584479182
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CGTCTAGTCT CCGCCCCCCC
  T
  CGCCCCCCCC CCCCGCCCTG CCACG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	I/LnJ	MA/MyJ	NZO/HlLtJ	RIIIS/J
ss917719623	MGP_WTSI_5_135013399	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	I/LnJ	MA/MyJ	NZO/HlLtJ	RIIIS/J
rs584479182					SNP	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917719623	MGP_WTSI_5_135013399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042253 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1224 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	611 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	453 bp distal
Rr110218	regulatory region 110218	within coordinates
Rr110219	regulatory region 110219	1548 bp proximal
Rr124504	regulatory region 124504	52 bp distal
Tssr1662	transcription start site region 1662	662 bp upstream
Tssr1663	transcription start site region 1663	229 bp upstream
Tssr1664	transcription start site region 1664	195 bp upstream
Tssr53717	transcription start site region 53717	638 bp upstream
Tssr53718	transcription start site region 53718	591 bp upstream
Tssr53719	transcription start site region 53719	576 bp upstream
Tssr53720	transcription start site region 53720	531 bp upstream
Tssr53721	transcription start site region 53721	274 bp upstream
Tssr53722	transcription start site region 53722	241 bp upstream