rs584509055 SNP Detail

Summary

• ID
  rs584509055
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3089450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CTCTCTCTTT CTTTTTTCCT GACTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ
ss916546842	MGP_WTSI_4_3089450	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ
rs584509055					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916546842	MGP_WTSI_4_3089450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3089450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	667 bp proximal
Rr588148	regulatory region 588148	40 bp proximal
Tssr36318	transcription start site region 36318	90 bp upstream
Tssr36319	transcription start site region 36319	312 bp upstream
Tssr36320	transcription start site region 36320	853 bp upstream
Tssr36321	transcription start site region 36321	932 bp upstream
Tssr36322	transcription start site region 36322	1023 bp upstream
Tssr36323	transcription start site region 36323	1221 bp upstream
Tssr36324	transcription start site region 36324	1326 bp upstream
Tssr40800	transcription start site region 40800	118 bp downstream
Tssr40801	transcription start site region 40801	344 bp downstream
Tssr40802	transcription start site region 40802	765 bp downstream
Tssr40803	transcription start site region 40803	822 bp downstream