AAAGG AGCGACGGAG GGAGGGAGGG R GGGAGGGAGG ATGGAAGGAA GGAAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
CE/J |
CZECHII/EiJ |
FVB/NJ |
JF1/MsJ |
KK/HlJ |
LG/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss921114460 | MGP_WTSI_11_119266201 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
CE/J |
CZECHII/EiJ |
FVB/NJ |
JF1/MsJ |
KK/HlJ |
LG/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZO/HlLtJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs584515350 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss921114460 | MGP_WTSI_11_119266201 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr11:119157027 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ccdc40 | coiled-coil domain containing 40 | 963 bp downstream | ||||||
Cpgi4265 | CpG island 4265 | 1453 bp proximal | ||||||
Gaa | glucosidase, alpha, acid | 1762 bp upstream | ||||||
Rr232403 | regulatory region 232403 | 27 bp distal | ||||||
Rr239320 | regulatory region 239320 | 1227 bp distal | ||||||
Rr239321 | regulatory region 239321 | 827 bp distal | ||||||
Rr246278 | regulatory region 246278 | 1373 bp proximal | ||||||
Rr403185 | regulatory region 403185 | 1655 bp upstream | ||||||
Tssr106170 | transcription start site region 106170 | 1756 bp upstream | ||||||
Tssr106171 | transcription start site region 106171 | 1803 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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