rs584526939 SNP Detail

Summary

• ID
  rs584526939
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCA AGAACAGGAC CAACAGTACA
  A
  TAGAAATGGC CAGATCTTAG GAGAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss923560683	MGP_WTSI_17_39849594	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs584526939					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923560683	MGP_WTSI_17_39849594	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160485 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	763 bp distal
Gm26917	predicted gene, 26917	806 bp downstream
Rn18s	18S ribosomal RNA	1393 bp distal
Rn18s-rs5	18s RNA, related sequence 5	1392 bp downstream
Tssr144614	transcription start site region 144614	1980 bp downstream
Tssr144615	transcription start site region 144615	1899 bp downstream
Tssr144616	transcription start site region 144616	1809 bp downstream
Tssr144617	transcription start site region 144617	1782 bp downstream
Tssr144618	transcription start site region 144618	1765 bp downstream
Tssr144619	transcription start site region 144619	1722 bp downstream
Tssr144620	transcription start site region 144620	1699 bp downstream
Tssr144621	transcription start site region 144621	1585 bp downstream
Tssr144622	transcription start site region 144622	1569 bp downstream
Tssr144623	transcription start site region 144623	1539 bp downstream
Tssr144624	transcription start site region 144624	1404 bp downstream
Tssr144625	transcription start site region 144625	1387 bp downstream
Tssr144626	transcription start site region 144626	1358 bp downstream
Tssr144627	transcription start site region 144627	1326 bp downstream
Tssr144628	transcription start site region 144628	1167 bp downstream
Tssr144629	transcription start site region 144629	1093 bp downstream
Tssr144630	transcription start site region 144630	1084 bp downstream
Tssr144631	transcription start site region 144631	987 bp downstream
Tssr144632	transcription start site region 144632	877 bp downstream
Tssr144633	transcription start site region 144633	830 bp downstream
Tssr148065	transcription start site region 148065	1810 bp upstream
Tssr148066	transcription start site region 148066	1733 bp upstream
Tssr148067	transcription start site region 148067	1633 bp upstream
Tssr148068	transcription start site region 148068	1535 bp upstream
Tssr148069	transcription start site region 148069	1352 bp upstream
Tssr148070	transcription start site region 148070	1288 bp upstream
Tssr148071	transcription start site region 148071	1262 bp upstream
Tssr148072	transcription start site region 148072	934 bp upstream