rs584533227 SNP Detail

Summary

• ID
  rs584533227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:22711761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TCTCTTTCTT TTCCTTCCTT
  Y
  CTTCCTTCCT TCCTTCCTTC CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923082496	MGP_WTSI_16_22893011	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584533227					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923082496	MGP_WTSI_16_22893011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22711761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahsg	alpha-2-HS-glycoprotein			Intron
				Noncoding-Transcript-Variant
Gm30505	predicted gene, 30505			within coordinates
Rr513334	regulatory region 513334			1602 bp distal
Rr513335	regulatory region 513335			962 bp distal
Rr513336	regulatory region 513336			971 bp proximal
Rr513337	regulatory region 513337			1320 bp proximal
Tssr4818	transcription start site region 4818			187 bp downstream
Tssr137555	transcription start site region 137555			1677 bp downstream
Tssr137556	transcription start site region 137556			1616 bp downstream
Tssr137557	transcription start site region 137557			960 bp downstream
Tssr137558	transcription start site region 137558			430 bp downstream
Tssr137559	transcription start site region 137559			234 bp downstream
Tssr137560	transcription start site region 137560			191 bp downstream
Tssr137561	transcription start site region 137561			166 bp downstream
Tssr137562	transcription start site region 137562			153 bp upstream
Tssr137563	transcription start site region 137563			1218 bp upstream
Tssr137564	transcription start site region 137564			1237 bp upstream
Tssr137565	transcription start site region 137565			1302 bp upstream
Tssr137566	transcription start site region 137566			1401 bp upstream
Tssr137567	transcription start site region 137567			1766 bp upstream
Tssr137568	transcription start site region 137568			1785 bp upstream
Tssr137569	transcription start site region 137569			1816 bp upstream
Tssr137570	transcription start site region 137570			1831 bp upstream
Tssr140501	transcription start site region 140501			862 bp upstream
Tssr140502	transcription start site region 140502			716 bp upstream
Tssr140503	transcription start site region 140503			678 bp upstream
Tssr140504	transcription start site region 140504			1339 bp downstream
Tssr140505	transcription start site region 140505			1412 bp downstream
Tssr140506	transcription start site region 140506			1819 bp downstream