rs584663138 SNP Detail

Summary

• ID
  rs584663138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32419848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA GGCGGCGGCG GCGGCGGCGG
  M
  GGAGGAGGAG GAGGAGGAGG AGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss916018711	MGP_WTSI_3_32365699	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	C	A	A	A	C	C	C	C	C	A	C	A	A	A	C	C	C	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs584663138					SNP	A	A	A	C	C	A	A	A	C	C	C	C	C	A	C	A	A	A	C	C	C	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916018711	MGP_WTSI_3_32365699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32419848 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	within coordinates
Rr77496	regulatory region 77496	within coordinates
Rr374783	regulatory region 374783	within coordinates
Tssr28742	transcription start site region 28742	1295 bp downstream
Tssr28743	transcription start site region 28743	771 bp downstream
Tssr28744	transcription start site region 28744	373 bp downstream
Tssr28745	transcription start site region 28745	346 bp downstream
Tssr32923	transcription start site region 32923	544 bp upstream
Tssr32924	transcription start site region 32924	481 bp upstream
Tssr32925	transcription start site region 32925	273 bp upstream
Tssr32926	transcription start site region 32926	77 bp upstream
Tssr32927	transcription start site region 32927	8 bp upstream
Tssr32928	transcription start site region 32928	193 bp downstream
Zmat3	zinc finger matrin type 3	34 bp upstream