rs584676920 SNP Detail

Summary

• ID
  rs584676920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3071687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACA CAGGGTGGCC TTATCTACAA
  Y
  AAAACTACAA CACATAAAAA TAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss920693797	MGP_WTSI_11_3121687	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs584676920					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693797	MGP_WTSI_11_3121687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3071687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1577 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr402381	regulatory region 402381	462 bp downstream
Rr441449	regulatory region 441449	462 bp proximal
Rr441450	regulatory region 441450	1232 bp proximal
Rr441451	regulatory region 441451	1639 bp proximal
Rr441452	regulatory region 441452	1798 bp proximal