rs584730404 SNP Detail

Summary

• ID
  rs584730404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:85304989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA AAGACCCACC TGGGGCTGCC
  S
  TTGCTCCCTT CCATCTTCCA CAGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	CBA/J	DBA/1J	I/LnJ	NOD/ShiLtJ	RF/J	ST/bJ
ss914774094	MGP_WTSI_1_85327268	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	CBA/J	DBA/1J	I/LnJ	NOD/ShiLtJ	RF/J	ST/bJ
rs584730404					SNP	C	C	C	C	C	C	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914774094	MGP_WTSI_1_85327268	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85304989 () rs orientation: forward

Symbol	Name	Function Class
Gm2619	predicted gene 2619	Noncoding-Transcript-Variant
Gm16025	predicted gene 16025	within coordinates
Rr414357	regulatory region 414357	70 bp proximal
Tssr137	transcription start site region 137	552 bp downstream