rs584732648 SNP Detail

Summary

• ID
  rs584732648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40505968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACTCGTGAGT CACACACACA
  M
  ACACACACAC ACACACACAC ACACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss914604963	MGP_WTSI_1_40466808	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	C	A	C	C	A	A	C	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs584732648					SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	C	A	C	C	A	A	C	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914604963	MGP_WTSI_1_40466808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40505968 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	1393 bp downstream
Il18r1	interleukin 18 receptor 1	within coordinates
Rr16188	regulatory region 16188	968 bp distal
Rr29358	regulatory region 29358	567 bp distal
Rr33590	regulatory region 33590	233 bp proximal
Rr33591	regulatory region 33591	1233 bp proximal
Rr371160	regulatory region 371160	469 bp downstream
Tssr6465	transcription start site region 6465	1110 bp downstream
Tssr6466	transcription start site region 6466	1079 bp downstream
Tssr6467	transcription start site region 6467	833 bp downstream
Tssr6468	transcription start site region 6468	802 bp downstream
Tssr6469	transcription start site region 6469	730 bp downstream
Tssr6470	transcription start site region 6470	697 bp downstream
Tssr6471	transcription start site region 6471	598 bp downstream
Tssr6472	transcription start site region 6472	506 bp downstream