rs584749567 SNP Detail

Summary

• ID
  rs584749567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA TCATGTGCAC ACATCATGCA
  Y
  ACACATCATA CACACACATC ATGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	ZALENDE/EiJ
ss915801262	MGP_WTSI_2_165067438	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	ZALENDE/EiJ
rs584749567					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915801262	MGP_WTSI_2_165067438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909358 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr52793	regulatory region 52793	1665 bp proximal
Tssr21713	transcription start site region 21713	1719 bp downstream
Tssr21714	transcription start site region 21714	754 bp downstream
Tssr21715	transcription start site region 21715	720 bp downstream
Tssr21716	transcription start site region 21716	670 bp downstream
Tssr21717	transcription start site region 21717	577 bp downstream
Tssr21718	transcription start site region 21718	530 bp downstream
Tssr21719	transcription start site region 21719	436 bp downstream
Tssr21720	transcription start site region 21720	243 bp downstream
Tssr21721	transcription start site region 21721	198 bp downstream
Tssr21722	transcription start site region 21722	661 bp upstream