rs584763628 SNP Detail

Summary

• ID
  rs584763628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78232950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT AAGCTGCCCA GGGTCCCCTC
  K
  GGAAGCCCAG CTCTAGGGCC ACCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss922916056	MGP_WTSI_15_78348750	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs584763628					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922916056	MGP_WTSI_15_78348750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78232950 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	90 bp downstream
Rr505249	regulatory region 505249	341 bp distal
Tssr131932	transcription start site region 131932	671 bp downstream
Tssr131933	transcription start site region 131933	587 bp downstream
Tssr131934	transcription start site region 131934	521 bp downstream
Tssr131935	transcription start site region 131935	459 bp downstream
Tssr131936	transcription start site region 131936	196 bp upstream
Tssr131937	transcription start site region 131937	223 bp upstream
Tssr131938	transcription start site region 131938	277 bp upstream
Tssr131939	transcription start site region 131939	345 bp upstream
Tssr131940	transcription start site region 131940	418 bp upstream
Tssr131941	transcription start site region 131941	512 bp upstream
Tssr131942	transcription start site region 131942	550 bp upstream