rs584768279 SNP Detail

Summary

• ID
  rs584768279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189839738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCA TATATATATA TATATATATA
  Y
  ATATATATAT ATACACATAC ATATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	QSi3/Ianm	RIIIS/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss915198730	MGP_WTSI_1_190107541	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	T	T	T	T	T	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	QSi3/Ianm	RIIIS/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs584768279					SNP	T	T	C	C	T	T	T	T	T	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915198730	MGP_WTSI_1_190107541	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189839738 () rs orientation: forward

Symbol	Name	Function Class
Rr425910	regulatory region 425910	101 bp distal
Rr425911	regulatory region 425911	123 bp proximal