rs584804964 SNP Detail

Summary

• ID
  rs584804964
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93354022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCG CCGGGAGCAA GAGCTCCGCC
  K
  GGAGCAAGAG CTCCGCCGGG AGCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916289622	MGP_WTSI_3_93446715	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584804964					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916289622	MGP_WTSI_3_93446715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93354022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	1921 bp upstream
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr962	transcription start site region 962	1589 bp downstream
Tssr963	transcription start site region 963	1553 bp downstream
Tssr964	transcription start site region 964	1454 bp downstream
Tssr30372	transcription start site region 30372	2000 bp downstream
Tssr30373	transcription start site region 30373	1947 bp downstream
Tssr30374	transcription start site region 30374	1933 bp downstream
Tssr30375	transcription start site region 30375	1920 bp downstream
Tssr30376	transcription start site region 30376	1884 bp downstream
Tssr30377	transcription start site region 30377	1858 bp downstream
Tssr30378	transcription start site region 30378	1836 bp downstream
Tssr30379	transcription start site region 30379	1819 bp downstream
Tssr30380	transcription start site region 30380	1740 bp downstream
Tssr30381	transcription start site region 30381	1723 bp downstream
Tssr30382	transcription start site region 30382	1668 bp downstream
Tssr30383	transcription start site region 30383	1657 bp downstream
Tssr30384	transcription start site region 30384	1648 bp downstream
Tssr30385	transcription start site region 30385	1623 bp downstream
Tssr30386	transcription start site region 30386	1601 bp downstream
Tssr30387	transcription start site region 30387	1507 bp downstream
Tssr30388	transcription start site region 30388	1488 bp downstream
Tssr30389	transcription start site region 30389	1466 bp downstream
Tssr30390	transcription start site region 30390	1395 bp downstream
Tssr30391	transcription start site region 30391	1385 bp downstream
Tssr30392	transcription start site region 30392	1367 bp downstream
Tssr30393	transcription start site region 30393	1356 bp downstream
Tssr30394	transcription start site region 30394	1330 bp downstream
Tssr30395	transcription start site region 30395	1303 bp downstream
Tssr30396	transcription start site region 30396	1253 bp downstream
Tssr30397	transcription start site region 30397	1237 bp downstream
Tssr30398	transcription start site region 30398	1159 bp downstream
Tssr30399	transcription start site region 30399	1080 bp downstream
Tssr30400	transcription start site region 30400	631 bp downstream
Tssr30401	transcription start site region 30401	610 bp downstream
Tssr30402	transcription start site region 30402	510 bp downstream
Tssr30403	transcription start site region 30403	473 bp downstream
Tssr30404	transcription start site region 30404	658 bp upstream
Tssr30405	transcription start site region 30405	769 bp upstream
Tssr30406	transcription start site region 30406	917 bp upstream
Tssr30407	transcription start site region 30407	1112 bp upstream
Tssr34356	transcription start site region 34356	1996 bp upstream
Tssr34357	transcription start site region 34357	1931 bp upstream
Tssr34358	transcription start site region 34358	1872 bp upstream
Tssr34359	transcription start site region 34359	1797 bp upstream
Tssr34360	transcription start site region 34360	1752 bp upstream
Tssr34361	transcription start site region 34361	1695 bp upstream
Tssr34362	transcription start site region 34362	1682 bp upstream
Tssr34363	transcription start site region 34363	1657 bp upstream
Tssr34364	transcription start site region 34364	1642 bp upstream
Tssr34365	transcription start site region 34365	1616 bp upstream
Tssr34366	transcription start site region 34366	1548 bp upstream
Tssr34367	transcription start site region 34367	1383 bp upstream
Tssr34368	transcription start site region 34368	1353 bp upstream
Tssr34369	transcription start site region 34369	1327 bp upstream
Tssr34370	transcription start site region 34370	1301 bp upstream
Tssr34371	transcription start site region 34371	1158 bp upstream
Tssr34372	transcription start site region 34372	497 bp upstream
Tssr34373	transcription start site region 34373	661 bp downstream