rs584884049 SNP Detail

Summary

• ID
  rs584884049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTTGGGGG ACATAGGGCG
  R
  GCGCTAAGGG GACATCAAGG GACGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919808887	MGP_WTSI_9_46230496	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584884049					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919808887	MGP_WTSI_9_46230496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141794 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	27 bp downstream
Cpgi21701	CpG island 21701	within coordinates
Rr195182	regulatory region 195182	1594 bp distal
Rr195183	regulatory region 195183	794 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84840	transcription start site region 84840	1782 bp downstream
Tssr84841	transcription start site region 84841	1652 bp downstream
Tssr84842	transcription start site region 84842	1550 bp downstream
Tssr84843	transcription start site region 84843	1516 bp downstream
Tssr84844	transcription start site region 84844	1342 bp downstream
Tssr84845	transcription start site region 84845	1305 bp downstream
Tssr84846	transcription start site region 84846	1250 bp downstream
Tssr84847	transcription start site region 84847	588 bp downstream
Tssr84848	transcription start site region 84848	510 bp downstream
Tssr84849	transcription start site region 84849	474 bp downstream
Tssr84850	transcription start site region 84850	432 bp downstream
Tssr84851	transcription start site region 84851	397 bp downstream
Tssr84852	transcription start site region 84852	300 bp downstream
Tssr84853	transcription start site region 84853	266 bp downstream
Tssr84854	transcription start site region 84854	253 bp downstream
Tssr84855	transcription start site region 84855	233 bp downstream
Tssr84856	transcription start site region 84856	222 bp downstream
Tssr84857	transcription start site region 84857	100 bp downstream
Tssr84858	transcription start site region 84858	63 bp downstream
Tssr89313	transcription start site region 89313	521 bp upstream
Tssr89314	transcription start site region 89314	493 bp upstream
Tssr89315	transcription start site region 89315	470 bp upstream
Tssr89316	transcription start site region 89316	450 bp upstream
Tssr89317	transcription start site region 89317	441 bp upstream
Tssr89318	transcription start site region 89318	417 bp upstream
Tssr89319	transcription start site region 89319	407 bp upstream
Tssr89320	transcription start site region 89320	394 bp upstream
Tssr89321	transcription start site region 89321	369 bp upstream
Tssr89322	transcription start site region 89322	286 bp upstream
Tssr89323	transcription start site region 89323	234 bp upstream
Tssr89324	transcription start site region 89324	206 bp upstream
Tssr89325	transcription start site region 89325	181 bp upstream
Tssr89326	transcription start site region 89326	147 bp upstream
Tssr89327	transcription start site region 89327	33 bp upstream