rs584928253 SNP Detail

Summary

• ID
  rs584928253
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135396970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG GAGCCCGAGC CGGGTCGGGG
  M
  GCGGGCGGGC GGGCGGGCGG CTCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss916457216	MGP_WTSI_3_135691209	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs584928253					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916457216	MGP_WTSI_3_135691209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135396970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	within coordinates
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	mRNA-UTR
Rr398044	regulatory region 398044	771 bp downstream
Rr585767	regulatory region 585767	327 bp proximal
Rr585768	regulatory region 585768	1821 bp proximal
Tssr31845	transcription start site region 31845	1966 bp downstream
Tssr35823	transcription start site region 35823	1941 bp upstream
Tssr35824	transcription start site region 35824	1427 bp upstream
Tssr35825	transcription start site region 35825	within coordinates
Tssr35826	transcription start site region 35826	56 bp downstream
Tssr35827	transcription start site region 35827	65 bp downstream
Tssr35828	transcription start site region 35828	116 bp downstream
Tssr35829	transcription start site region 35829	176 bp downstream
Tssr35830	transcription start site region 35830	202 bp downstream
Tssr35831	transcription start site region 35831	211 bp downstream
Tssr35832	transcription start site region 35832	279 bp downstream
Tssr35833	transcription start site region 35833	303 bp downstream
Tssr35834	transcription start site region 35834	730 bp downstream