rs584958261 SNP Detail

Summary

• ID
  rs584958261
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:42457628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTTCTTTC TTTCTTTCTT
  T
  CTTCCTTCCT TCCTTCCTTC CTTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J
ss920344386	MGP_WTSI_10_42581632	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J
rs584958261					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920344386	MGP_WTSI_10_42581632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42457628 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1483	CpG island 1483			1057 bp distal
Cpgi1484	CpG island 1484			335 bp proximal
Nr2e1	nuclear receptor subfamily 2, group E, member 1			Intron
				mRNA-UTR
Rr430584	regulatory region 430584			53 bp proximal
Rr430585	regulatory region 430585			1990 bp proximal
Tssr97447	transcription start site region 97447			1947 bp downstream
Tssr97448	transcription start site region 97448			1972 bp downstream
Tssr97449	transcription start site region 97449			1996 bp downstream