rs584994031 SNP Detail

Summary

• ID
  rs584994031
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89097090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTG TGTGTGTGTG
  W
  GATATGTTAG CATGCACACT CCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss916264633	MGP_WTSI_3_89189783	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs584994031					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916264633	MGP_WTSI_3_89189783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89097090 () rs orientation: forward

Symbol	Name	Function Class
Entrep3	endosomal transmembrane epsin interactor 3	488 bp downstream
Rr367465	regulatory region 367465	721 bp upstream
Rr579970	regulatory region 579970	792 bp distal
Rr579971	regulatory region 579971	579 bp proximal
Tssr30057	transcription start site region 30057	1953 bp downstream
Tssr30058	transcription start site region 30058	1887 bp downstream
Tssr30059	transcription start site region 30059	1818 bp downstream
Tssr30060	transcription start site region 30060	1786 bp downstream
Tssr30061	transcription start site region 30061	1455 bp downstream
Tssr30062	transcription start site region 30062	1417 bp downstream
Tssr30063	transcription start site region 30063	1373 bp downstream
Tssr34094	transcription start site region 34094	1146 bp upstream