rs584995961 SNP Detail

Summary

• ID
  rs584995961
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16059291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA CAGACAGACA GACAGACAGA
  M
  AGACAGAAAG AAAGAAAGAA AGGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/1J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J
ss915940446	MGP_WTSI_3_16005127	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/1J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J
rs584995961					SNP	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915940446	MGP_WTSI_3_16005127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16059291 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	within coordinates
Rr374567	regulatory region 374567	25 bp downstream
Tssr32658	transcription start site region 32658	1201 bp downstream
Tssr32659	transcription start site region 32659	1217 bp downstream
Tssr32660	transcription start site region 32660	1254 bp downstream