rs585001851 SNP Detail

Summary

• ID
  rs585001851
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG AGGGAGGGAG GGAGGGAGGA
  A
  GGAAGGAAGG AAGGAAGGGA GGAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923116070	MGP_WTSI_16_32486926	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585001851					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923116070	MGP_WTSI_16_32486926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305744 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1133 bp upstream
Rr514710	regulatory region 514710	1373 bp distal
Rr514711	regulatory region 514711	206 bp proximal
Rr514712	regulatory region 514712	943 bp proximal
Rr514713	regulatory region 514713	1144 bp proximal
Rr514714	regulatory region 514714	1845 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	670 bp downstream
Tssr4847	transcription start site region 4847	689 bp downstream
Tssr137989	transcription start site region 137989	1167 bp upstream
Tssr140806	transcription start site region 140806	751 bp upstream
Tssr140807	transcription start site region 140807	226 bp downstream
Tssr140808	transcription start site region 140808	242 bp downstream
Tssr140809	transcription start site region 140809	269 bp downstream
Tssr140810	transcription start site region 140810	299 bp downstream
Tssr140811	transcription start site region 140811	717 bp downstream
Tssr140812	transcription start site region 140812	741 bp downstream
Tssr140813	transcription start site region 140813	883 bp downstream
Tssr140814	transcription start site region 140814	947 bp downstream
Tssr140815	transcription start site region 140815	971 bp downstream