rs585005461 SNP Detail

Summary

• ID
  rs585005461
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT TCTAGAAATA GAAAAGGACC
  G
  AGTTTACTGA GAAAGAGGAG TGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059801	MGP_WTSI_1_150105241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585005461					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059801	MGP_WTSI_1_150105241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980992 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	592 bp distal
Rr24983	regulatory region 24983	696 bp distal
Tssr9247	transcription start site region 9247	1986 bp downstream
Tssr9248	transcription start site region 9248	1553 bp downstream
Tssr9249	transcription start site region 9249	1539 bp downstream
Tssr9250	transcription start site region 9250	1338 bp downstream
Tssr9251	transcription start site region 9251	1286 bp downstream
Tssr9252	transcription start site region 9252	1251 bp downstream
Tssr9253	transcription start site region 9253	1226 bp downstream
Tssr9254	transcription start site region 9254	1210 bp downstream
Tssr9255	transcription start site region 9255	1159 bp downstream
Tssr9256	transcription start site region 9256	954 bp downstream
Tssr9257	transcription start site region 9257	920 bp downstream
Tssr9258	transcription start site region 9258	904 bp downstream
Tssr9259	transcription start site region 9259	847 bp downstream
Tssr9260	transcription start site region 9260	795 bp downstream
Tssr9261	transcription start site region 9261	776 bp downstream
Tssr9262	transcription start site region 9262	755 bp downstream
Tssr9263	transcription start site region 9263	743 bp downstream
Tssr9264	transcription start site region 9264	694 bp downstream
Tssr9265	transcription start site region 9265	667 bp downstream
Tssr9266	transcription start site region 9266	578 bp downstream
Tssr9267	transcription start site region 9267	243 bp downstream
Tssr9268	transcription start site region 9268	173 bp downstream
Tssr9269	transcription start site region 9269	143 bp upstream
Tssr9270	transcription start site region 9270	183 bp upstream
Tssr9271	transcription start site region 9271	207 bp upstream
Tssr9272	transcription start site region 9272	237 bp upstream
Tssr9273	transcription start site region 9273	289 bp upstream
Tssr9274	transcription start site region 9274	307 bp upstream
Tssr9275	transcription start site region 9275	334 bp upstream
Tssr9276	transcription start site region 9276	349 bp upstream
Tssr9277	transcription start site region 9277	399 bp upstream
Tssr9278	transcription start site region 9278	420 bp upstream
Tssr9279	transcription start site region 9279	441 bp upstream
Tssr9280	transcription start site region 9280	458 bp upstream
Tssr9281	transcription start site region 9281	564 bp upstream
Tssr9282	transcription start site region 9282	599 bp upstream
Tssr9283	transcription start site region 9283	613 bp upstream
Tssr9284	transcription start site region 9284	628 bp upstream
Tssr9285	transcription start site region 9285	638 bp upstream
Tssr9286	transcription start site region 9286	722 bp upstream
Tssr9287	transcription start site region 9287	1235 bp upstream
Tssr9288	transcription start site region 9288	1351 bp upstream
Tssr9289	transcription start site region 9289	1368 bp upstream
Tssr9290	transcription start site region 9290	1524 bp upstream
Tssr9291	transcription start site region 9291	1570 bp upstream
Tssr9292	transcription start site region 9292	1689 bp upstream
Tssr9293	transcription start site region 9293	1718 bp upstream
Tssr9294	transcription start site region 9294	1738 bp upstream
Tssr9295	transcription start site region 9295	1754 bp upstream
Tssr9296	transcription start site region 9296	1776 bp upstream
Tssr9297	transcription start site region 9297	1785 bp upstream
Tssr9298	transcription start site region 9298	1811 bp upstream
Tssr9299	transcription start site region 9299	1833 bp upstream
Tssr9300	transcription start site region 9300	1850 bp upstream
Tssr9301	transcription start site region 9301	1984 bp upstream