rs585006301 SNP Detail

Summary

• ID
  rs585006301
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32903370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT GCGGGGGCGG GGGGGGGGGC
  G
  GGGGGGGTTC CCTGGGGGGG GCGCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss917314987	MGP_WTSI_5_32746026	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs585006301					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917314987	MGP_WTSI_5_32746026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32903370 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	458 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	within coordinates
Rr609421	regulatory region 609421	276 bp proximal
Rr609422	regulatory region 609422	469 bp proximal
Rr609423	regulatory region 609423	1567 bp proximal
Rr609424	regulatory region 609424	1805 bp proximal
Tssr45794	transcription start site region 45794	93 bp upstream
Tssr45795	transcription start site region 45795	495 bp upstream
Tssr50589	transcription start site region 50589	246 bp downstream
Tssr50590	transcription start site region 50590	291 bp downstream
Tssr50591	transcription start site region 50591	317 bp downstream