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rs585012953 SNP Detail
Summary
  • ID
    rs585012953
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44128716 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GACAG GGTTTCTCTG TGTAGCCCTG
R
CTGTCCTGGA ATTCACTCTG TAGGC                                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918712688 MGP_WTSI_7_44479292 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585012953 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918712688 MGP_WTSI_7_44479292 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128716 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1913 bp downstream
Tssr2225 transcription start site region 2225 1873 bp downstream
Tssr2226 transcription start site region 2226 1347 bp downstream
Tssr2227 transcription start site region 2227 272 bp downstream
Tssr2228 transcription start site region 2228 786 bp upstream
Tssr2229 transcription start site region 2229 1062 bp upstream
Tssr2230 transcription start site region 2230 1241 bp upstream
Tssr2231 transcription start site region 2231 1374 bp upstream
Tssr2232 transcription start site region 2232 1549 bp upstream
Tssr2233 transcription start site region 2233 1582 bp upstream
Tssr2234 transcription start site region 2234 1741 bp upstream
Tssr66242 transcription start site region 66242 1959 bp downstream
Tssr66243 transcription start site region 66243 1945 bp downstream
Tssr66244 transcription start site region 66244 1894 bp downstream
Tssr66245 transcription start site region 66245 1832 bp downstream
Tssr66246 transcription start site region 66246 1804 bp downstream
Tssr66247 transcription start site region 66247 1757 bp downstream
Tssr66248 transcription start site region 66248 1716 bp downstream
Tssr66249 transcription start site region 66249 1693 bp downstream
Tssr66250 transcription start site region 66250 1674 bp downstream
Tssr66251 transcription start site region 66251 1649 bp downstream
Tssr66252 transcription start site region 66252 1618 bp downstream
Tssr66253 transcription start site region 66253 1590 bp downstream
Tssr66254 transcription start site region 66254 1542 bp downstream
Tssr66255 transcription start site region 66255 1515 bp downstream
Tssr66256 transcription start site region 66256 1466 bp downstream
Tssr66257 transcription start site region 66257 1455 bp downstream
Tssr66258 transcription start site region 66258 1412 bp downstream
Tssr66259 transcription start site region 66259 1376 bp downstream
Tssr66260 transcription start site region 66260 1269 bp downstream
Tssr66261 transcription start site region 66261 1248 bp downstream
Tssr66262 transcription start site region 66262 1241 bp downstream
Tssr66263 transcription start site region 66263 1229 bp downstream
Tssr66264 transcription start site region 66264 1205 bp downstream
Tssr66265 transcription start site region 66265 1162 bp downstream
Tssr66266 transcription start site region 66266 1145 bp downstream
Tssr66267 transcription start site region 66267 1108 bp downstream
Tssr66268 transcription start site region 66268 1092 bp downstream
Tssr66269 transcription start site region 66269 1056 bp downstream
Tssr66270 transcription start site region 66270 1021 bp downstream
Tssr66271 transcription start site region 66271 989 bp downstream
Tssr66272 transcription start site region 66272 937 bp downstream
Tssr66273 transcription start site region 66273 919 bp downstream
Tssr66274 transcription start site region 66274 914 bp downstream
Tssr66275 transcription start site region 66275 894 bp downstream
Tssr66276 transcription start site region 66276 874 bp downstream
Tssr66277 transcription start site region 66277 854 bp downstream
Tssr66278 transcription start site region 66278 810 bp downstream
Tssr66279 transcription start site region 66279 765 bp downstream
Tssr66280 transcription start site region 66280 743 bp downstream
Tssr66281 transcription start site region 66281 703 bp downstream
Tssr66282 transcription start site region 66282 686 bp downstream
Tssr66283 transcription start site region 66283 672 bp downstream
Tssr66284 transcription start site region 66284 660 bp downstream
Tssr66285 transcription start site region 66285 646 bp downstream
Tssr66286 transcription start site region 66286 607 bp downstream
Tssr66287 transcription start site region 66287 571 bp downstream
Tssr66288 transcription start site region 66288 546 bp downstream
Tssr66289 transcription start site region 66289 464 bp downstream
Tssr66290 transcription start site region 66290 426 bp downstream
Tssr66291 transcription start site region 66291 400 bp downstream
Tssr66292 transcription start site region 66292 368 bp downstream
Tssr66293 transcription start site region 66293 346 bp downstream
Tssr66294 transcription start site region 66294 322 bp downstream
Tssr66295 transcription start site region 66295 57 bp downstream
Tssr66296 transcription start site region 66296 73 bp upstream
Tssr66297 transcription start site region 66297 116 bp upstream
Tssr66298 transcription start site region 66298 141 bp upstream
Tssr66299 transcription start site region 66299 210 bp upstream
Tssr66300 transcription start site region 66300 217 bp upstream
Tssr66301 transcription start site region 66301 241 bp upstream
Tssr66302 transcription start site region 66302 255 bp upstream
Tssr66303 transcription start site region 66303 296 bp upstream
Tssr66304 transcription start site region 66304 304 bp upstream
Tssr66305 transcription start site region 66305 314 bp upstream
Tssr66306 transcription start site region 66306 348 bp upstream
Tssr66307 transcription start site region 66307 405 bp upstream
Tssr66308 transcription start site region 66308 458 bp upstream
Tssr66309 transcription start site region 66309 479 bp upstream
Tssr66310 transcription start site region 66310 517 bp upstream
Tssr66311 transcription start site region 66311 594 bp upstream
Tssr66312 transcription start site region 66312 610 bp upstream
Tssr66313 transcription start site region 66313 631 bp upstream
Tssr66314 transcription start site region 66314 639 bp upstream
Tssr66315 transcription start site region 66315 659 bp upstream
Tssr66316 transcription start site region 66316 718 bp upstream
Tssr66317 transcription start site region 66317 730 bp upstream
Tssr66318 transcription start site region 66318 775 bp upstream
Tssr66319 transcription start site region 66319 798 bp upstream
Tssr66320 transcription start site region 66320 825 bp upstream
Tssr66321 transcription start site region 66321 843 bp upstream
Tssr66322 transcription start site region 66322 863 bp upstream
Tssr66323 transcription start site region 66323 909 bp upstream
Tssr66324 transcription start site region 66324 938 bp upstream
Tssr66325 transcription start site region 66325 968 bp upstream
Tssr66326 transcription start site region 66326 1009 bp upstream
Tssr66327 transcription start site region 66327 1023 bp upstream
Tssr66328 transcription start site region 66328 1039 bp upstream
Tssr66329 transcription start site region 66329 1078 bp upstream
Tssr66330 transcription start site region 66330 1097 bp upstream
Tssr66331 transcription start site region 66331 1111 bp upstream
Tssr66332 transcription start site region 66332 1132 bp upstream
Tssr66333 transcription start site region 66333 1180 bp upstream
Tssr66334 transcription start site region 66334 1192 bp upstream
Tssr66335 transcription start site region 66335 1201 bp upstream
Tssr66336 transcription start site region 66336 1210 bp upstream
Tssr66337 transcription start site region 66337 1228 bp upstream
Tssr66338 transcription start site region 66338 1284 bp upstream
Tssr66339 transcription start site region 66339 1335 bp upstream
Tssr66340 transcription start site region 66340 1380 bp upstream
Tssr66341 transcription start site region 66341 1425 bp upstream
Tssr66342 transcription start site region 66342 1487 bp upstream
Tssr66343 transcription start site region 66343 1519 bp upstream
Tssr66344 transcription start site region 66344 1664 bp upstream
Tssr66345 transcription start site region 66345 1697 bp upstream
Tssr66346 transcription start site region 66346 1753 bp upstream
Tssr66347 transcription start site region 66347 1791 bp upstream
Tssr66348 transcription start site region 66348 1832 bp upstream
Tssr66349 transcription start site region 66349 1856 bp upstream
Tssr66350 transcription start site region 66350 1884 bp upstream
Tssr66351 transcription start site region 66351 1892 bp upstream
Tssr66352 transcription start site region 66352 1928 bp upstream
Tssr72199 transcription start site region 72199 1809 bp upstream
Tssr72200 transcription start site region 72200 851 bp upstream
Tssr72201 transcription start site region 72201 341 bp upstream
Tssr72202 transcription start site region 72202 501 bp downstream
Tssr72203 transcription start site region 72203 887 bp downstream
Tssr72204 transcription start site region 72204 1483 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory