rs585032036 SNP Detail

Summary

• ID
  rs585032036
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122580302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT CCTTCCTTCC TTCCTTCCTT
  T
  CTTTTTTTCT TCCTTCCTTC CTTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918334584	MGP_WTSI_6_122603343	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585032036					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918334584	MGP_WTSI_6_122603343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122580302 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	899 bp upstream
Rr399899	regulatory region 399899	831 bp downstream
Rr399900	regulatory region 399900	767 bp upstream
Rr638222	regulatory region 638222	983 bp distal
Rr638223	regulatory region 638223	409 bp distal
Rr638224	regulatory region 638224	1908 bp proximal
Tssr58686	transcription start site region 58686	638 bp downstream
Tssr62923	transcription start site region 62923	999 bp upstream
Tssr62924	transcription start site region 62924	943 bp upstream
Tssr62925	transcription start site region 62925	921 bp upstream
Tssr62926	transcription start site region 62926	231 bp upstream
Tssr62927	transcription start site region 62927	1033 bp downstream