rs585060991 SNP Detail

Summary

• ID
  rs585060991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34849865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT AGGGAATGGT GCCATCCACA
  R
  TGGGCTGGAT GTTCCCACAT CAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915346859	MGP_WTSI_2_34959853	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585060991					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915346859	MGP_WTSI_2_34959853	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34849865 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			1506 bp proximal
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1218 bp downstream
Rr396906	regulatory region 396906			1469 bp downstream
Rr555565	regulatory region 555565			1556 bp distal
Rr555566	regulatory region 555566			1374 bp distal
Rr555567	regulatory region 555567			782 bp distal
Rr555568	regulatory region 555568			641 bp proximal
Rr555569	regulatory region 555569			1672 bp proximal
Rr555570	regulatory region 555570			1722 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr476	transcription start site region 476			1536 bp downstream
Tssr17437	transcription start site region 17437			1518 bp downstream
Tssr17438	transcription start site region 17438			1498 bp downstream
Tssr17439	transcription start site region 17439			984 bp downstream
Tssr17440	transcription start site region 17440			1149 bp upstream
Tssr17441	transcription start site region 17441			1548 bp upstream
Tssr17442	transcription start site region 17442			1830 bp upstream
Tssr17443	transcription start site region 17443			1849 bp upstream
Tssr17444	transcription start site region 17444			1866 bp upstream
Tssr23667	transcription start site region 23667			1765 bp upstream
Tssr23668	transcription start site region 23668			1740 bp upstream
Tssr23669	transcription start site region 23669			1712 bp upstream
Tssr23670	transcription start site region 23670			1680 bp upstream
Tssr23671	transcription start site region 23671			1221 bp upstream
Tssr23672	transcription start site region 23672			1110 bp upstream
Tssr23673	transcription start site region 23673			1702 bp downstream
Tssr23674	transcription start site region 23674			1898 bp downstream
Tssr23675	transcription start site region 23675			1936 bp downstream
Tssr23676	transcription start site region 23676			1949 bp downstream
Tssr23677	transcription start site region 23677			1967 bp downstream