rs585098133 SNP Detail

Summary

• ID
  rs585098133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84493021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA ATAAAAATAA TAATAAAAAA
  Y
  AAAAAAAACG AGAGAACCGA AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923740113	MGP_WTSI_17_84185593	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585098133					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923740113	MGP_WTSI_17_84185593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84493021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	5 bp proximal
Rr1582	regulatory region 1582	1793 bp downstream
Rr340271	regulatory region 340271	within coordinates
Tssr146043	transcription start site region 146043	1821 bp downstream
Tssr146044	transcription start site region 146044	153 bp upstream
Tssr146045	transcription start site region 146045	1497 bp upstream
Tssr149650	transcription start site region 149650	6 bp upstream
Tssr149651	transcription start site region 149651	9 bp downstream
Tssr149652	transcription start site region 149652	394 bp downstream
Tssr149653	transcription start site region 149653	442 bp downstream
Tssr149654	transcription start site region 149654	582 bp downstream
Tssr149655	transcription start site region 149655	678 bp downstream
Tssr149656	transcription start site region 149656	768 bp downstream
Tssr149657	transcription start site region 149657	984 bp downstream
Tssr149658	transcription start site region 149658	1041 bp downstream
Tssr149659	transcription start site region 149659	1076 bp downstream
Tssr149660	transcription start site region 149660	1107 bp downstream
Tssr149661	transcription start site region 149661	1156 bp downstream
Tssr149662	transcription start site region 149662	1215 bp downstream
Tssr149663	transcription start site region 149663	1279 bp downstream
Tssr149664	transcription start site region 149664	1320 bp downstream
Tssr149665	transcription start site region 149665	1365 bp downstream
Tssr149666	transcription start site region 149666	1434 bp downstream
Tssr149667	transcription start site region 149667	1523 bp downstream
Tssr149668	transcription start site region 149668	1578 bp downstream
Tssr149669	transcription start site region 149669	1611 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates