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rs585099967 SNP Detail
Summary
  • ID
    rs585099967
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr11:94844205 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTCTC TCTCTCTCTC TCTCTCTCTC
T
CACACACACA CACACACACA CACAC                                      

T = T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
KK/HlJ
LP/J
NZW/LacJ
PWK/PhJ
SEA/GnJ
SPRET/EiJ
WSB/EiJ
ss921028721 MGP_WTSI_11_94953379 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
KK/HlJ
LP/J
NZW/LacJ
PWK/PhJ
SEA/GnJ
SPRET/EiJ
WSB/EiJ
rs585099967 SNP T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss921028721 MGP_WTSI_11_94953379 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94844205 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 337 bp downstream
D11Lis1 DNA segment, Chr 11, Lisse 1 within coordinates
Gm74287 predicted gene, 74287 872 bp downstream
Rr454892 regulatory region 454892 813 bp distal
Rr454893 regulatory region 454893 1801 bp proximal
Tssr3647 transcription start site region 3647 1395 bp downstream
Tssr104283 transcription start site region 104283 1902 bp downstream
Tssr104284 transcription start site region 104284 1842 bp downstream
Tssr104285 transcription start site region 104285 1812 bp downstream
Tssr104286 transcription start site region 104286 1779 bp downstream
Tssr104287 transcription start site region 104287 1755 bp downstream
Tssr104288 transcription start site region 104288 1715 bp downstream
Tssr104289 transcription start site region 104289 1707 bp downstream
Tssr104290 transcription start site region 104290 1659 bp downstream
Tssr104291 transcription start site region 104291 1644 bp downstream
Tssr104292 transcription start site region 104292 1547 bp downstream
Tssr104293 transcription start site region 104293 1440 bp downstream
Tssr104294 transcription start site region 104294 1406 bp downstream
Tssr104295 transcription start site region 104295 1362 bp downstream
Tssr104296 transcription start site region 104296 1338 bp downstream
Tssr104297 transcription start site region 104297 1315 bp downstream
Tssr104298 transcription start site region 104298 1281 bp downstream
Tssr104299 transcription start site region 104299 1247 bp downstream
Tssr104300 transcription start site region 104300 1227 bp downstream
Tssr104301 transcription start site region 104301 1107 bp downstream
Tssr104302 transcription start site region 104302 1093 bp downstream
Tssr104303 transcription start site region 104303 1074 bp downstream
Tssr104304 transcription start site region 104304 1032 bp downstream
Tssr104305 transcription start site region 104305 1010 bp downstream
Tssr104306 transcription start site region 104306 995 bp downstream
Tssr104307 transcription start site region 104307 978 bp downstream
Tssr104308 transcription start site region 104308 905 bp downstream
Tssr104309 transcription start site region 104309 881 bp downstream
Tssr104310 transcription start site region 104310 795 bp downstream
Tssr104311 transcription start site region 104311 746 bp downstream
Tssr104312 transcription start site region 104312 677 bp downstream
Tssr104313 transcription start site region 104313 661 bp downstream
Tssr104314 transcription start site region 104314 256 bp downstream
Tssr110225 transcription start site region 110225 1842 bp upstream
Tssr110226 transcription start site region 110226 1802 bp upstream
Tssr110227 transcription start site region 110227 1789 bp upstream
Tssr110228 transcription start site region 110228 1729 bp upstream
Tssr110229 transcription start site region 110229 1709 bp upstream
Tssr110230 transcription start site region 110230 1672 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory