rs585145061 SNP Detail

Summary

• ID
  rs585145061
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG ACTTCAGCAG TGGTGGTGAC
  A
  TCAGCAGTGG TGGTGACATC ACCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ
ss917727684	MGP_WTSI_5_137149477	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ
rs585145061					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727684	MGP_WTSI_5_137149477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178325 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	209 bp upstream
Tssr1678	transcription start site region 1678	1007 bp downstream
Tssr1679	transcription start site region 1679	1950 bp downstream
Tssr1680	transcription start site region 1680	1970 bp upstream
Tssr1681	transcription start site region 1681	1993 bp downstream
Tssr49309	transcription start site region 49309	301 bp upstream
Tssr49310	transcription start site region 49310	661 bp upstream
Tssr49311	transcription start site region 49311	675 bp upstream
Tssr49312	transcription start site region 49312	1055 bp upstream
Tssr49313	transcription start site region 49313	1303 bp upstream
Tssr49314	transcription start site region 49314	1574 bp upstream
Tssr49315	transcription start site region 49315	1590 bp upstream
Tssr53919	transcription start site region 53919	161 bp downstream
Tssr53920	transcription start site region 53920	177 bp downstream
Tssr53921	transcription start site region 53921	332 bp downstream
Tssr53922	transcription start site region 53922	373 bp downstream
Tssr53923	transcription start site region 53923	414 bp downstream
Tssr53924	transcription start site region 53924	428 bp downstream
Tssr53925	transcription start site region 53925	466 bp downstream
Tssr53926	transcription start site region 53926	497 bp downstream
Tssr53927	transcription start site region 53927	646 bp downstream
Tssr53928	transcription start site region 53928	664 bp downstream
Tssr53929	transcription start site region 53929	701 bp downstream
Tssr53930	transcription start site region 53930	766 bp downstream
Tssr53931	transcription start site region 53931	791 bp downstream
Tssr53932	transcription start site region 53932	807 bp downstream
Tssr53933	transcription start site region 53933	845 bp downstream
Tssr53934	transcription start site region 53934	877 bp downstream
Tssr53935	transcription start site region 53935	928 bp downstream
Tssr53936	transcription start site region 53936	949 bp downstream
Tssr53937	transcription start site region 53937	1039 bp downstream
Tssr53938	transcription start site region 53938	1075 bp downstream
Tssr53939	transcription start site region 53939	1129 bp downstream
Tssr53940	transcription start site region 53940	1305 bp downstream
Tssr53941	transcription start site region 53941	1345 bp downstream
Tssr53942	transcription start site region 53942	1404 bp downstream
Tssr53943	transcription start site region 53943	1569 bp downstream
Tssr53944	transcription start site region 53944	1618 bp downstream
Tssr53945	transcription start site region 53945	1628 bp downstream
Tssr53946	transcription start site region 53946	1649 bp downstream
Tssr53947	transcription start site region 53947	1757 bp downstream