rs585176231 SNP Detail

Summary

• ID
  rs585176231
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78699265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC GGCGGAAAAA AAAAAAAAAA
  G
  AAGGCGCAGC GGGAGCGCGC TCGCG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss925270360	MGP_WTSI_2_78868921_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs585176231					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925270360	MGP_WTSI_2_78868921_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78699265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11839	CpG island 11839	within coordinates
Rr559887	regulatory region 559887	within coordinates
Rr559888	regulatory region 559888	within coordinates
Rr559889	regulatory region 559889	267 bp proximal
Rr559890	regulatory region 559890	273 bp proximal
Tssr18521	transcription start site region 18521	165 bp downstream
Tssr18522	transcription start site region 18522	113 bp downstream
Tssr18523	transcription start site region 18523	88 bp upstream
Tssr18524	transcription start site region 18524	199 bp upstream
Tssr18525	transcription start site region 18525	231 bp upstream
Tssr18526	transcription start site region 18526	280 bp upstream
Tssr18527	transcription start site region 18527	377 bp upstream
Tssr18528	transcription start site region 18528	424 bp upstream
Tssr18529	transcription start site region 18529	561 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3	Intron