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rs585239357 SNP Detail
Summary
  • ID
    rs585239357
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:103287627 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTGTT TGTGTGTGTG TGTGTGCATG
Y
GTGTGTGTGT GTGTGTGCGG TGTGT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss922494517 MGP_WTSI_14_103050191 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585239357 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss922494517 MGP_WTSI_14_103050191 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:103287627 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Acod1 aconitate decarboxylase 1 within coordinates
Gm41235 predicted gene, 41235 1451 bp upstream
Rr404266 regulatory region 404266 1270 bp upstream
Rr496962 regulatory region 496962 1044 bp distal
Rr496963 regulatory region 496963 1315 bp proximal
Rr496964 regulatory region 496964 1367 bp proximal
Rr496965 regulatory region 496965 1414 bp proximal
Tssr4512 transcription start site region 4512 1096 bp downstream
Tssr126972 transcription start site region 126972 1286 bp downstream
Tssr126973 transcription start site region 126973 1159 bp downstream
Tssr126974 transcription start site region 126974 929 bp downstream
Tssr126975 transcription start site region 126975 915 bp downstream
Tssr126976 transcription start site region 126976 892 bp downstream
Tssr126977 transcription start site region 126977 867 bp downstream
Tssr126978 transcription start site region 126978 825 bp downstream
Tssr126979 transcription start site region 126979 806 bp downstream
Tssr126980 transcription start site region 126980 794 bp downstream
Tssr126981 transcription start site region 126981 583 bp downstream
Tssr126982 transcription start site region 126982 525 bp downstream
Tssr126983 transcription start site region 126983 488 bp downstream
Tssr126984 transcription start site region 126984 315 bp downstream
Tssr126985 transcription start site region 126985 110 bp upstream
Tssr126986 transcription start site region 126986 843 bp upstream
Tssr126987 transcription start site region 126987 882 bp upstream
Tssr126988 transcription start site region 126988 1099 bp upstream
Tssr126989 transcription start site region 126989 1122 bp upstream
Tssr126990 transcription start site region 126990 1329 bp upstream
Tssr126991 transcription start site region 126991 1401 bp upstream
Tssr126992 transcription start site region 126992 1626 bp upstream
Tssr126993 transcription start site region 126993 1645 bp upstream
Tssr126994 transcription start site region 126994 1667 bp upstream
Tssr126995 transcription start site region 126995 1708 bp upstream
Tssr130074 transcription start site region 130074 1809 bp upstream
Tssr130075 transcription start site region 130075 1770 bp upstream
Tssr130076 transcription start site region 130076 1755 bp upstream
Tssr130077 transcription start site region 130077 1484 bp upstream
Tssr130078 transcription start site region 130078 1457 bp upstream
Tssr130079 transcription start site region 130079 1436 bp upstream
Tssr130080 transcription start site region 130080 1232 bp downstream
Tssr130081 transcription start site region 130081 1287 bp downstream
Tssr130082 transcription start site region 130082 1314 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory