rs585258203 SNP Detail

Summary

• ID
  rs585258203
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148792827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC CAATGATGCT CTCCTGCCTC
  T
  CTCTCTCTCT CTCTCTCTCT CTCTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss916506731	MGP_WTSI_3_149087191	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs585258203					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916506731	MGP_WTSI_3_149087191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148792827 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587257	regulatory region 587257	1681 bp distal
Rr587258	regulatory region 587258	185 bp distal
Rr587259	regulatory region 587259	173 bp proximal
Rr587260	regulatory region 587260	474 bp proximal
Rr587261	regulatory region 587261	1232 bp proximal
Rr587262	regulatory region 587262	1531 bp proximal