rs585297100 SNP Detail

Summary

• ID
  rs585297100
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3030144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC ATTTTTCTTG CCTTATTCCA
  C
  GTCCTATAGT GGACATTTCT AAATT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	LG/J
ss919606970	MGP_WTSI_9_3030144	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	LG/J
rs585297100					SNP	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919606970	MGP_WTSI_9_3030144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3030144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	434 bp distal
Cpgi21326	CpG island 21326	1743 bp proximal
Rr673609	regulatory region 673609	1474 bp distal
Rr673610	regulatory region 673610	104 bp distal
Rr673611	regulatory region 673611	187 bp proximal
Rr673612	regulatory region 673612	1987 bp proximal
Tssr83588	transcription start site region 83588	749 bp downstream
Tssr83589	transcription start site region 83589	468 bp downstream
Tssr83590	transcription start site region 83590	11 bp upstream
Tssr83591	transcription start site region 83591	924 bp upstream
Tssr83592	transcription start site region 83592	954 bp upstream
Tssr83593	transcription start site region 83593	1740 bp upstream
Tssr83594	transcription start site region 83594	1855 bp upstream
Tssr88023	transcription start site region 88023	724 bp upstream
Tssr88024	transcription start site region 88024	1767 bp downstream