rs585400848 SNP Detail

Summary

• ID
  rs585400848
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143802759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT ATATATATAT ATATATATAT
  A
  TATATATATA TATATGCATC ACTTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C58/J	CZECHII/EiJ	PWK/PhJ
ss917756469	MGP_WTSI_5_143817004	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C58/J	CZECHII/EiJ	PWK/PhJ
rs585400848					SNP	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917756469	MGP_WTSI_5_143817004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143802759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16998	CpG island 16998	460 bp proximal
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	827 bp upstream
Rr399488	regulatory region 399488	85 bp upstream
Rr399489	regulatory region 399489	554 bp upstream
Rr624298	regulatory region 624298	184 bp proximal
Rr624299	regulatory region 624299	294 bp proximal
Rr624300	regulatory region 624300	795 bp proximal
Rr624301	regulatory region 624301	1134 bp proximal
Tssr49676	transcription start site region 49676	782 bp upstream
Tssr49677	transcription start site region 49677	815 bp upstream
Tssr49678	transcription start site region 49678	845 bp upstream