rs585470575 SNP Detail

Summary

• ID
  rs585470575
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114859836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACTAGTAA
  A
  TAAAATGTTT TGTTTTTGGT TTTTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss919550090	MGP_WTSI_8_114133096	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs585470575					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919550090	MGP_WTSI_8_114133096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114859836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	354 bp proximal
D8Mit139	DNA segment, Chr 8, Massachusetts Institute of Technology 139	1855 bp proximal
Gm56821	predicted gene, 56821	111 bp upstream
Nudt7	nudix hydrolase 7	478 bp upstream
Rr401147	regulatory region 401147	313 bp upstream
Rr670352	regulatory region 670352	1610 bp distal
Rr670353	regulatory region 670353	within coordinates
Rr670354	regulatory region 670354	557 bp proximal
Tssr79531	transcription start site region 79531	473 bp upstream
Tssr79532	transcription start site region 79532	505 bp upstream
Tssr79533	transcription start site region 79533	539 bp upstream
Tssr83007	transcription start site region 83007	1501 bp upstream
Tssr83008	transcription start site region 83008	1492 bp upstream