rs585470930 SNP Detail

Summary

• ID
  rs585470930
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48047665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA ACCCAGTAGA ATAGGGGGTG
  S
  GGTTGCTGGA GGAACCCCCC CCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916754894	MGP_WTSI_4_48047665	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585470930					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916754894	MGP_WTSI_4_48047665	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48047665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	937 bp distal
Cpgi14279	CpG island 14279	within coordinates
Cpgi14280	CpG island 14280	1204 bp proximal
Gm68858	predicted gene, 68858	467 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	478 bp distal
Rr591930	regulatory region 591930	within coordinates
Rr591931	regulatory region 591931	360 bp proximal
Rr591932	regulatory region 591932	1024 bp proximal
Tssr37194	transcription start site region 37194	1690 bp downstream
Tssr37195	transcription start site region 37195	407 bp downstream
Tssr37196	transcription start site region 37196	386 bp downstream
Tssr37197	transcription start site region 37197	355 bp downstream
Tssr37198	transcription start site region 37198	338 bp downstream
Tssr37199	transcription start site region 37199	288 bp downstream
Tssr37200	transcription start site region 37200	276 bp downstream
Tssr37201	transcription start site region 37201	73 bp upstream
Tssr37202	transcription start site region 37202	199 bp upstream
Tssr37203	transcription start site region 37203	236 bp upstream
Tssr37204	transcription start site region 37204	402 bp upstream
Tssr37205	transcription start site region 37205	447 bp upstream
Tssr37206	transcription start site region 37206	610 bp upstream
Tssr37207	transcription start site region 37207	1361 bp upstream
Tssr37208	transcription start site region 37208	1415 bp upstream
Tssr41633	transcription start site region 41633	704 bp upstream
Tssr41634	transcription start site region 41634	515 bp upstream
Tssr41635	transcription start site region 41635	1383 bp downstream
Tssr41636	transcription start site region 41636	1432 bp downstream