rs585500227 SNP Detail

Summary

• ID
  rs585500227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170901171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG ACGCCTGCGA GGCGAGTGAG
  M
  TGGAGCCCAA ACCGCCGTCA GGATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss915123923	MGP_WTSI_1_171073602	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	C	C	C	A	A	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs585500227					SNP	C	A	C	C	C	A	A	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915123923	MGP_WTSI_1_171073602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170901171 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1315 bp upstream
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	538 bp upstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	1739 bp upstream
n-TGgcc13	nuclear encoded tRNA glycine 13 (anticodon GCC)	700 bp upstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1197 bp upstream
n-TLcag7	nuclear encoded tRNA leucine 7 (anticodon CAG)	17 bp upstream
Rr423203	regulatory region 423203	913 bp distal
Rr423204	regulatory region 423204	1102 bp distal