rs585502509 SNP Detail

Summary

• ID
  rs585502509
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132571231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT AGAGACCCCC CAAAAAATTT
  W
  AAAAAAAAAA AAGCCCGAGG TCCGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss917709997	MGP_WTSI_5_132542392	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs585502509					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917709997	MGP_WTSI_5_132542392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132571231 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	52 bp distal
Cpgi16711	CpG island 16711	267 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1320 bp distal
Rr621808	regulatory region 621808	1132 bp distal
Rr621809	regulatory region 621809	31 bp distal
Rr621810	regulatory region 621810	255 bp proximal
Rr621811	regulatory region 621811	942 bp proximal
Rr621812	regulatory region 621812	1553 bp proximal
Tssr53594	transcription start site region 53594	371 bp upstream
Tssr53595	transcription start site region 53595	178 bp upstream
Tssr53596	transcription start site region 53596	6 bp upstream
Tssr53597	transcription start site region 53597	744 bp downstream
Tssr53598	transcription start site region 53598	771 bp downstream
Tssr53599	transcription start site region 53599	971 bp downstream