rs585517099 SNP Detail

Summary

• ID
  rs585517099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC CAGGGAGCTT AGGTTGGGGC
  R
  GGGAGGGTGT TCTGGTTTAC CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss923475743	MGP_WTSI_17_22314520	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	A	A	A	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs585517099					SNP	A	G	G	G	G	G	G	G	G	G	G	A	A	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923475743	MGP_WTSI_17_22314520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533501 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	402 bp upstream
Rr392409	regulatory region 392409	1707 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	307 bp proximal
Tssr146602	transcription start site region 146602	274 bp downstream
Tssr146603	transcription start site region 146603	294 bp downstream