rs585529953 SNP Detail

Summary

• ID
  rs585529953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT GTTAGGGAGA TGCTCTAGGC
  R
  CTGTTCAAAT TCCCTTTCTT TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss915798457	MGP_WTSI_2_164332282	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs585529953					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915798457	MGP_WTSI_2_164332282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174202 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	483 bp upstream
Tssr744	transcription start site region 744	1047 bp upstream
Tssr745	transcription start site region 745	1090 bp upstream
Tssr746	transcription start site region 746	1101 bp upstream
Tssr747	transcription start site region 747	1114 bp downstream
Tssr748	transcription start site region 748	1135 bp upstream
Tssr749	transcription start site region 749	1167 bp upstream
Tssr750	transcription start site region 750	1180 bp upstream
Tssr751	transcription start site region 751	1234 bp upstream
Tssr752	transcription start site region 752	1303 bp upstream
Tssr753	transcription start site region 753	1310 bp upstream
Tssr754	transcription start site region 754	1982 bp upstream
Tssr21562	transcription start site region 21562	441 bp upstream
Tssr21563	transcription start site region 21563	458 bp upstream
Tssr21564	transcription start site region 21564	477 bp upstream
Tssr21565	transcription start site region 21565	502 bp upstream
Tssr21566	transcription start site region 21566	512 bp upstream
Tssr21567	transcription start site region 21567	526 bp upstream
Tssr21568	transcription start site region 21568	536 bp upstream
Tssr21569	transcription start site region 21569	1013 bp upstream
Tssr21570	transcription start site region 21570	1075 bp upstream
Tssr21571	transcription start site region 21571	1106 bp upstream
Tssr21572	transcription start site region 21572	1123 bp upstream
Tssr21573	transcription start site region 21573	1152 bp upstream
Tssr21574	transcription start site region 21574	1216 bp upstream
Tssr21575	transcription start site region 21575	1994 bp upstream
Tssr27433	transcription start site region 27433	1071 bp downstream
Tssr27434	transcription start site region 27434	1094 bp downstream
Tssr27435	transcription start site region 27435	1122 bp downstream
Tssr27436	transcription start site region 27436	1141 bp downstream
Tssr27437	transcription start site region 27437	1162 bp downstream
Tssr27438	transcription start site region 27438	1192 bp downstream
Tssr27439	transcription start site region 27439	1206 bp downstream
Tssr27440	transcription start site region 27440	1216 bp downstream
Tssr27441	transcription start site region 27441	1271 bp downstream
Tssr27442	transcription start site region 27442	1279 bp downstream
Tssr27443	transcription start site region 27443	1342 bp downstream
Tssr27444	transcription start site region 27444	1351 bp downstream
Tssr27445	transcription start site region 27445	1967 bp downstream