AGCTT TTGTTCCTCG GCTTCACAGT W GTAGAGGAGA TGTGACCAAC TGCCT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss917606488 | MGP_WTSI_5_105132913 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs585571681 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss917606488 | MGP_WTSI_5_105132913 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr5:105280779 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gbp4 | guanylate binding protein 4 | Intron | ||||||
Tssr1571 | transcription start site region 1571 | 1127 bp upstream | ||||||
Tssr52267 | transcription start site region 52267 | 1581 bp upstream | ||||||
Tssr52268 | transcription start site region 52268 | 1527 bp upstream | ||||||
Tssr52269 | transcription start site region 52269 | 1452 bp upstream | ||||||
Tssr52270 | transcription start site region 52270 | 1290 bp upstream | ||||||
Tssr52271 | transcription start site region 52271 | 1172 bp upstream | ||||||
Tssr52272 | transcription start site region 52272 | 1109 bp upstream | ||||||
Tssr52273 | transcription start site region 52273 | 1031 bp upstream | ||||||
Tssr52274 | transcription start site region 52274 | 1000 bp upstream | ||||||
Tssr52275 | transcription start site region 52275 | 975 bp upstream | ||||||
Tssr52276 | transcription start site region 52276 | 941 bp upstream | ||||||
Tssr52277 | transcription start site region 52277 | 925 bp upstream | ||||||
Tssr52278 | transcription start site region 52278 | 898 bp upstream | ||||||
Tssr52279 | transcription start site region 52279 | 836 bp upstream | ||||||
Tssr52280 | transcription start site region 52280 | 785 bp upstream | ||||||
Tssr52281 | transcription start site region 52281 | 754 bp upstream | ||||||
Tssr52282 | transcription start site region 52282 | 737 bp upstream | ||||||
Tssr52283 | transcription start site region 52283 | 651 bp upstream | ||||||
Tssr52284 | transcription start site region 52284 | 594 bp upstream | ||||||
Tssr52285 | transcription start site region 52285 | 562 bp upstream | ||||||
Tssr52286 | transcription start site region 52286 | 532 bp upstream | ||||||
Tssr52287 | transcription start site region 52287 | 517 bp upstream | ||||||
Tssr52288 | transcription start site region 52288 | 503 bp upstream | ||||||
Tssr52289 | transcription start site region 52289 | 423 bp upstream | ||||||
Tssr52290 | transcription start site region 52290 | 316 bp upstream | ||||||
Tssr52291 | transcription start site region 52291 | 15 bp downstream | ||||||
Tssr52292 | transcription start site region 52292 | 494 bp downstream | ||||||
Tssr52293 | transcription start site region 52293 | 664 bp downstream | ||||||
Tssr52294 | transcription start site region 52294 | 761 bp downstream | ||||||
Tssr52295 | transcription start site region 52295 | 1079 bp downstream | ||||||
Tssr52296 | transcription start site region 52296 | 1701 bp downstream | ||||||
Tssr52297 | transcription start site region 52297 | 1779 bp downstream | ||||||
Tssr52298 | transcription start site region 52298 | 1872 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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