rs585574725 SNP Detail

Summary

• ID
  rs585574725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67470256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT TAGTTAAATT CAGCAGACTT
  W
  AAAAAAACAA AAACAAAACA AAACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss922360397	MGP_WTSI_14_67232807	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs585574725					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922360397	MGP_WTSI_14_67232807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67470256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	552 bp distal
Cpgi6658	CpG island 6658	410 bp proximal
Cpgi6659	CpG island 6659	1374 bp proximal
Ebf2	early B cell factor 2	485 bp upstream
Gm20675	predicted gene 20675	within coordinates
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	375 bp upstream
Tssr126328	transcription start site region 126328	479 bp upstream
Tssr126329	transcription start site region 126329	628 bp upstream
Tssr126330	transcription start site region 126330	1095 bp upstream
Tssr126331	transcription start site region 126331	1781 bp upstream
Tssr126332	transcription start site region 126332	1813 bp upstream
Tssr126333	transcription start site region 126333	1924 bp upstream
Tssr126334	transcription start site region 126334	1988 bp upstream