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rs585574725 SNP Detail
Summary
  • ID
    rs585574725
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr14:67470256 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAGAT TAGTTAAATT CAGCAGACTT
    W
    AAAAAAACAA AAACAAAACA AAACT                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CZECHII/EiJ
DBA/2J
I/LnJ
JF1/MsJ
LP/J
MOLF/EiJ
NOD/ShiLtJ
PWK/PhJ
SM/J
SPRET/EiJ
ST/bJ
SWR/J
ss922360397 MGP_WTSI_14_67232807 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A T A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CZECHII/EiJ
DBA/2J
I/LnJ
JF1/MsJ
LP/J
MOLF/EiJ
NOD/ShiLtJ
PWK/PhJ
SM/J
SPRET/EiJ
ST/bJ
SWR/J
rs585574725 SNP A A A A A A A A A A A A A A A A A A A A A T A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss922360397 MGP_WTSI_14_67232807 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:67470256 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6657 CpG island 6657 552 bp distal
Cpgi6658 CpG island 6658 410 bp proximal
Cpgi6659 CpG island 6659 1374 bp proximal
Ebf2 early B cell factor 2 485 bp upstream
Gm20675 predicted gene 20675 within coordinates
Gm63531 predicted gene, 63531 1897 bp downstream
Rr494420 regulatory region 494420 1862 bp distal
Rr494421 regulatory region 494421 1006 bp distal
Rr494422 regulatory region 494422 within coordinates
Rr494423 regulatory region 494423 556 bp proximal
Rr494424 regulatory region 494424 790 bp proximal
Rr494425 regulatory region 494425 1007 bp proximal
Rr494426 regulatory region 494426 1654 bp proximal
Tssr126327 transcription start site region 126327 375 bp upstream
Tssr126328 transcription start site region 126328 479 bp upstream
Tssr126329 transcription start site region 126329 628 bp upstream
Tssr126330 transcription start site region 126330 1095 bp upstream
Tssr126331 transcription start site region 126331 1781 bp upstream
Tssr126332 transcription start site region 126332 1813 bp upstream
Tssr126333 transcription start site region 126333 1924 bp upstream
Tssr126334 transcription start site region 126334 1988 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory