rs585576415 SNP Detail

Summary

• ID
  rs585576415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96182374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GCTTTTGGTC TCCTATTCCC
  Y
  CCCCCCCCCC CCGCGCTGAT TTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	NOD/ShiLtJ	SPRET/EiJ	SWR/J
ss922976912	MGP_WTSI_15_96284493	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	NOD/ShiLtJ	SPRET/EiJ	SWR/J
rs585576415					SNP	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922976912	MGP_WTSI_15_96284493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96182374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	255 bp proximal
Cpgi7600	CpG island 7600	1796 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	671 bp downstream
Rr369997	regulatory region 369997	120 bp downstream
Rr391146	regulatory region 391146	295 bp upstream
Rr508521	regulatory region 508521	919 bp distal
Rr508522	regulatory region 508522	395 bp distal
Rr508523	regulatory region 508523	within coordinates
Rr508524	regulatory region 508524	1084 bp proximal
Rr508525	regulatory region 508525	1202 bp proximal
Tssr132814	transcription start site region 132814	1512 bp upstream
Tssr136021	transcription start site region 136021	998 bp downstream
Tssr136022	transcription start site region 136022	1216 bp downstream
Tssr136023	transcription start site region 136023	1392 bp downstream