rs585679913 SNP Detail

Summary

• ID
  rs585679913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69558005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG GCTGGGGTAG GAAAGCCTTT
  W
  GGAACGAGGT GACTAGGTTA GGGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920946234	MGP_WTSI_11_69667179	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs585679913					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920946234	MGP_WTSI_11_69667179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69558005 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	1026 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm24029	predicted gene, 24029	655 bp downstream
Gm25835	predicted gene, 25835	1673 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	536 bp distal
Tssr102512	transcription start site region 102512	1543 bp downstream
Tssr102513	transcription start site region 102513	1505 bp downstream
Tssr102514	transcription start site region 102514	1475 bp downstream
Tssr102515	transcription start site region 102515	1337 bp downstream
Tssr102516	transcription start site region 102516	686 bp downstream
Tssr102517	transcription start site region 102517	664 bp downstream
Tssr108754	transcription start site region 108754	1859 bp upstream
Tssr108755	transcription start site region 108755	1814 bp upstream
Tssr108756	transcription start site region 108756	1784 bp upstream
Tssr108757	transcription start site region 108757	1593 bp upstream
Tssr108758	transcription start site region 108758	1354 bp upstream
Tssr108759	transcription start site region 108759	1336 bp upstream
Tssr108760	transcription start site region 108760	1274 bp upstream
Tssr108761	transcription start site region 108761	1103 bp upstream
Tssr108762	transcription start site region 108762	1030 bp upstream
Tssr108763	transcription start site region 108763	1010 bp upstream
Tssr108764	transcription start site region 108764	46 bp downstream
Tssr108765	transcription start site region 108765	191 bp downstream
Tssr108766	transcription start site region 108766	1812 bp downstream