rs585680131 SNP Detail

Summary

• ID
  rs585680131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119160400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA CATACACACA CACACACATA
  Y
  ACACACCACA CACACACCAC ACCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	PWK/PhJ	RF/J	SJL/J	ST/bJ	SWR/J
ss915658901	MGP_WTSI_2_119329919	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	PWK/PhJ	RF/J	SJL/J	ST/bJ	SWR/J
rs585680131					SNP	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915658901	MGP_WTSI_2_119329919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119160400 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr63	DNA Segment, Chr 2, Derry C. Roopenian 63	909 bp distal
D2Mit104	DNA segment, Chr 2, Massachusetts Institute of Technology 104	910 bp distal
Dll4	delta like canonical Notch ligand 4	within coordinates
Rr55450	regulatory region 55450	399 bp distal
Tssr19626	transcription start site region 19626	153 bp downstream