rs585703301 SNP Detail

Summary

• ID
  rs585703301
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125993130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TCTCCTCTCC CCTCCCCTCT
  C
  CTCCTCTCTC TTCCCTTCCC TTCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	DBA/1J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss915678303	MGP_WTSI_2_126151210	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	DBA/1J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs585703301					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915678303	MGP_WTSI_2_126151210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125993130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	625 bp proximal
Dtwd1	DTW domain containing 1	931 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	767 bp upstream
Rr564315	regulatory region 564315	343 bp proximal
Rr564316	regulatory region 564316	784 bp proximal
Rr564317	regulatory region 564317	916 bp proximal
Rr564318	regulatory region 564318	942 bp proximal
Tssr19931	transcription start site region 19931	921 bp upstream
Tssr19932	transcription start site region 19932	955 bp upstream
Tssr26028	transcription start site region 26028	746 bp downstream
Tssr26029	transcription start site region 26029	758 bp downstream
Tssr26030	transcription start site region 26030	805 bp downstream